The table below lists the credits required for all available calculation engine jobs.
| Job |
Description |
Credits |
| Reference mapping |
Reference mapping using SNAP or Bowtie 2 |
1 |
| De novo assembly |
De novo genome assembly from short reads using SPAdes, SKESA, Unicycler or Velvet |
1 |
| De novo assembly (hybrid) |
Hybrid de novo genome assembly from short and long reads using Unicycler |
10 |
| wgMLST assembly-based calls |
BLAST-based allele calling on assembled genomes for wgMLST analysis |
3 |
| wgMLST assembly-free calls |
k-mer based allele calling on sequence read sets for wgMLST analysis |
3 |
| Annotation by Prokka |
Genome annotation by Prokka |
1 |
| CFSAN SNP pipeline |
SNP analysis on sequence read sets via the pipeline created by the FDA Center for Food Safety and Applied Nutrition (CFSAN) |
5 |
| RAxML pipeline |
A RAxML maximum likelihood clustering on aligned sequence data |
5 |
| FastTree pipeline |
A FastTree maximum likelihood clustering on aligned sequence data |
3 |
| MTBC genotyping |
Spoligo typing, resistance/lineage prediction and species prediction for Mycobacterium tuberculosis complex |
2 |
| SeqSero |
Salmonella serotype prediction by SeqSero |
1 |
