Single sample diversity analysis on sequence read sets

This tutorial illustrates how to calculate diversity coefficients, starting from preprocessed sequence read sets.

Sequence read sets

A sequence read set is designed to hold large sets of short reads generated by next generation sequencing (NGS). Base sequences and their associated quality scores are stored for single-end and paired-end reads, originating from various high-throughput pyrosequencing platforms such as Roche 454, Illumina Solexa, Ion Torrent, etc.

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Sequence read sets: Microbial diversity analysis
This zip folder contains a 16S rRNA reference alignment file, used for calculating microbial diversity analysis.
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