Aharoni, A., and O. Vorst. 2002. DNA microarrays for functional plant genomics. Plant Molecular Biology 48: 99-118.

Arai M., OS. Yokosuka, T. Chiba, F. Imazeki, M. Kato, J. Hashida, Y. Ueda, S. Sugano, K. Hahsimoto, H. Saisho, M. Takiguchi, and N. Seki. 2003. Gene Expression profiling reveals the mechanism and pathophysiology of mouse liver regeneration. J. Biol Chem. 278: 29813-29818.

Chang H.J., B.C. Yoo, S.-B. Lim, S.-Y. Jeong, W.H. Kim, and J.-G. Park. 2005. Metabotropic glutamate receptor 4 expression in colorectal carcinoma and its prognostic significance. Clin. Cancer Research. 11: 3288-3295.

Cheok M.Y., W. Yang, C.H. Poi, J.R. Downing, C. Cheng, C.O.W. Naive, M.V. Rolling, W.E. Evans. 2003. Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells. Nature Genetics 34: 85-90.

Christianson S., Golding G.R., Campbell J., the Canadian Nosocomial Infection Surveillance Program, Mulvey M.R. 2007. Comparative Genomics of Canadian Epidemic Lineages of Methicillin-Resistant Staphylococcus aureus. J. Clin. Microbiol. 45(6):1904-1911.

De Folter S., R.G.H. Immink, M. Kieffer, L. Pařenicová, S.R. Henz, D. Weigel, M. Busscher, M. Kooiker, L. Colombo, M.M. Kater, B. Davies, and G.C. Angenent. 2005. Comprehensive interaction map of the Arabidopsis MADS box transcription factors. The plant cell. 17: 1424-1433.

Dijkman R., van Doorn R., Szuhai K., Willemze R., Vermeer M.H., Tensen C.P. 2007. Gene-expression profiling and array-based CGH classify CD4+CD56+ hematodermic neoplasm and cutaneous myelomonocytic leukemia as distinct disease entities. Blood. 109(4):1720-1727.

Glaser K.B., M.J. Staver, J.F. Waring, J. Stender, R.G. Ulrich, and S.K. Davidsen. 2003. Gene expression profiling of multiple histone deacetylase (HDAC) inhibitors: defining a common gene set produced by HDAC inhibition in T24 and MDA carcinoma cell lines. Mol. Cancer Therapeutics 2:151-163.

Groot Koerkamp M., M. Rep, H.J. Bussemarker, G.P.M.A. Hardy, A. Mul, K. Piekarska, C. Al-Khalili Szigyarto, J.M. Texeira de Mattos, and H. F. Tabak. 2002. Dissection of transient oxidative stress response in Saccharomyces cerevisiae by using DNA Microarrays. Mol. Biol. Cell. 13: 2783-2794.

Gzyl A., E. Augustinowicz, E. Mosiej, M. Zawadka, G. Gniadek, A. Nowaczek and J. Slusarczyk. 2005. Amplified fragment length polymorphism (AFLP) versus randomly amplified polymorphic DNA (RAPD) as new tools for inter- and intra-species differentiation within Bortedella. J. Med. Microbiol. 54: 333-346.

Hanssen A.-M, A. Fossum, J. Mikalsen, D.S. Halvorsen, G. Bukholm, and J.U. Ericson Sollid. 2005. Dissemination of community-acquired methicillin-resistant Staphylococcus aureus clones in Northern Norway: sequence types 8 and 80 predominate. J. Clin. Microbiol. 43: 2118-2124.

Heneweer M., Houtman R., Poortman J., Groot M., Maliepaard C., Peijnenburg A. 2007. Estrogenic Effects in the Immature Rat Uterus after Dietary Exposure to Ethinylestradiol and Zearalenone Using a Systems Biology Approach. Toxicol. Sci. 99(1): 303-314.

Iwao K., R. Matoba, N. Ueno, A. Ando, Y. Miyoshi, K. Matsubara, S. Noguchi and K. Kato. 2002. Molecular classification of primary breast tumors possessing distinct prognostic properties. Human Mol. Genetics. 11: 199-206.

Janssen R., Pennings J., Hodemaekers H., Buisman A., van Oosten M., de Rond L., Ozturk K., Dormans J., Kimman T., Hoebee B. 2007. Host Transcription Profiles upon Primary Respiratory Syncytial Virus Infection. J. Virol. 81(11):5958-5967.

Joosen R., Cordewener J., Supena E. D.J., Vorst O., Lammers M., Maliepaard C., Zeilmaker T., Miki B., America T., Custers J., Boutilier K. 2007. Combined Transcriptome and Proteome Analysis Identifies Pathways and Markers Associated with the Establishment of Rapeseed Microspore-Derived Embryo Development. Plant Physiology. 144(1):155-172.

Kurokawa Y., R. Matoba, H. Nagano, M. Sakon, I. Takemasa, S. Nakamori, K. Dono, K. Umeshita, N. Ueno, S. Ishii, K. Kato, and M. Monden. 2004. Molecular prediction of response to 5-fluorouracil and interferon-α combination chemotherapy in advanced hepatocellular carcinoma. Clin. Cancer Research. 10: 6029-6038.

Lari N., L. Rindi, C. Sola, D. Bonanni, N. Rastogi, E. Tortoli, and C.Garzelli. 2005. Genetic diversity, determined on the basis of katG463 and gyrA95 polymorphisms, spoligotyping, and IS6110 typing, of Mycobacterium tuberculosis complex isolates from Italy. J. Clin. Microbiol. 43: 1617-1624.

Laukens D., H. Peeters, B. Vander Cruyssen, T. Boonefaes, D. Elewaut, F. De Keyser, H. Mielants, C. Cuvelier, E. Veys, K. Knecht, P. Van Hummelen, E. Remaut, L. Steidler, M. De Vos and P. Rottiers. 2006. Altered gut transcriptome in spondyloarthropathy. Ann. Rheum. Dis. Doi: 10.1136/ard.2005.047738.

Lee Y., H.L. Miller, P. Jensen, R. Hernan, M. Connelly, C. Wetmore, F. Zindy, M.F. Roussel, R. Curran, R.J. Gilbertson, and P.J. McKinnon. 2003. A molecular fingerprint for Medullobastoma. Cancer Research. 63: 5428-5437.

Ma X.-J., R. Salunga, J.T.Tuggle, J. Gaudet, E. Enright, P. McQuary, T. Payette, M. Pistone, K. Stecker, B.M. Zhang, Y.-X. Zhou, H. Varnholt, B. Smith, M. Gadd, E. Chatfield, J. Kessler, T.M. Baer, M.G. Erlander, and D.C. Sgroi. 2003. Gene expression profiles of human breast cancer progression. Genetics. 100: 5974-5979.

Marks H., O. Vorst, A.M.M.L. van Houwelingen, M.C.W. van Hulten, and J.M. Vlak. 2005. Gene-expression profiling of White spot syndrome virus in vivo. J. Gen. Virol. 86: 2081-2100.

Masubelele N.H., W. Dewitte, M. Menges,S. Maughan, C. Collins, R. Huntley, J. Nieuwland, S. Scofield, and J.A.H. Murray. 2005. D-type cyclins activate division in the root apex to promote seed germination in Arabidopsis. PNAS (102): 15694-15699.

Menges M., L. Hennig, W. Gruissem, and J.A.H. Murray. 2002. Cell cycle regulated gene expression in Arabidopsis. J. Biol. Chem. 10:

Mercke P., I.F. Kappers, F.W.A. Verstappen, O. Vorst, M. Dicke and H.J. Bouwmeester. 2004. Combined transcript and metabolite analysis reveals genes involved in spider mite induced volatile formation in cucumber plants. Plant Physiol. 135: 2012-2024.

Mulligan G., Mitsiades C., Bryant B., Zhan F., Chng W.J., Roels S., Koenig E., Fergus A., Huang Y., Richardson P., Trepicchio W.L., Broyl A., Sonneveld P., Shaughnessy J.D., Leif Bergsagel P., Schenkein D., Esseltine D.-L., Boral A., Anderson K. C. 2007. Gene expression profiling and correlation with outcome in clinical trials of the proteasome inhibitor bortezomib. Blood. 109(8):3177-3188.

Robertson B.R., J.L. O’Rourke, B.A. Neilan, P. Vandamme, S.L.W. On, J.G. Fox and A. Lee. 2005. Mucispirillum schaedleri gen.nov., sp. nov., a spiral-shaped bacterium colonizing the mucus layer of the gastrointestinal tract of laboratory rodents. Int. J. Syst. Evol. Microbiol. 55: 1199-1204.

Rodenburg W., Bovee-Oudenhoven I. M.J., Kramer E., van der Meer R., Keijer J. 2007. Gene expression response of the rat small intestine following oral Salmonella infection. Physiol Genomics. 00190.2006.

Hoeberichts F. A., van Doorn W. G., Vorst O., Hall R. D., van Wordragen M. F. 2007. Sucrose prevents up-regulation of senescence-associated genes in carnation petals. J. Exp. Bot. 58(11): 2873-2885.

Ross I.L., and M.W. Heuzenroeder. 2005. Discrimination with phenotypically closely related definitive types of Salmonella enterica serovar typhimurium by the multiple amplification of phage locus typing technique. J. Clin. Microbiol. 43: 1604-1611.

Ross M.E., R. Mahfouz, M. Onciu, H.-C. Liu, X. Zhou, G. Song, S.A. Shurtleff, S. Pounds, C. Cheng, J. Ma, R.C. Ribeiro, J.E. Rubnitz, K. Girtman, W.K. Williams, S.C. Raimondi, D.-C. Liang, L.-Y. Shih, C.-H. Pui, and J.R. Downing. 2004. Gene expression profiling of pediatric acute myelogenous leukemia. Blood- 2004-03-1154.

Ross M.E., S. Zhou, G. Song, S.A. Shurtleff, K. Girtman, W.K. Williams, H.-C. Liu, R. Mahfouz, S.C. Raimondi, N. Lenny, A. Patel and J.R. Downing. 2003. Classification of pediatric acute lymphoblastic leukemia by gene expression profiling. Blood. 102: 2951-2959.

Saito S., K. Homma, H. Kita-Matsuo, R. Ochiya, and K. Kato. 2005. Gene expression profiling of cerebellar development with high-througput functional analysis. Physiol. Genomics. 22: 8-13.

Sappal D.S., A.K. McClendon, J.A. Fleming, V. Thoroddsen, K. Connolly, C. Reimer, R.K. Blackman, C.E. Bulawa, N. Osheroff, P. Charlton, and L.A. Rudolph-Owen. 2004. Biological characterization of MLN944: a potent DNA binding agent. Mol. Cancer Ther. 3: 47-58.

Sharma S., M.K. Aneja, J. Mayer, J.C. Munch, and M. Schloter. 2005. Diversity of transcripts of nitrite reductase genes (nirK and nirS) in rhizospheres of grain legumes. Appl. Environ. Microbiol. 71: 2001-2007.

Smith M.Th., V. Robert, G.A. Poot, W. Epping, and A.W.A.M. de Cock. 2005. Taxonomy and phylogeny of the ascomycetous yeast genus Zygoascus, with proposal of Zygoascus meyerae sp.nov. and related anamorphic varieties.Int. J. Syst. Evol. Microbiol. 55: 1353-1363.

Strauss L.G., A. Dimitrakopoulou-Strauss, D. Koczan, L. Bernd, U. Haberkorn, V. Ewerbeck, and H.-J. Thiesen. 2004. ¹⁸F-FDG kinetics and gene expression in giant cell tumors. J. Nucl. Med. 45: 1528-1535.

Tao H., R. Gonzalez, A. Martinez, M. Rodriguez, L.O. Ingram, J.F. Preston, and K.T. Shanmugam. 2001. Engineering a homo-ethanol pathway in Escherichia coli: increased clycolytic flux and levels of expression of glycolytic genes during xylose fermentation. J. Bacteriol. 183: 2979-2988.

Tikunov Y., A. Lommen, C.H. R. De Vos, H.A. Verhoeven, R.J. Bino, R.D. Hall and A.G. Bovy. 2005. A novel approach for nontargeted data analysis for Metabolomics. Large-scale profiling of tomato fruit volatiles. Plant Physiology. 139:1135-1137.

Van der Meer-Van Kraaij C., E.M.M. Van Lieshout, E. Kramer, R. van der Meer, and J. Keijer. 2003. Mucosal pentraxin (Mptx), a novel rat gene 10-fold down-regulated in colon by dietary heme. FASEB Journal. 17: 1277-1285.

Wesley I.V., W.T. Muraoka, D.W. Trampel, and H.S. Hurd. 2005. Effect of preslaughter events on prevalence of Campylobacter jejuni and Campylobacter coli in market-weight turkeys. Appl. Environ. Microbiol. 71: 2824-2831.

Whitman E.D., M. Moore, and D. Baunoch. 2005. Gene expression profiling of paraffin embedded melanoma specimens. J. Clin. Oncol. 23: 7532.

Wild P.J., A. Herr, C. Wissmann, R. Stoehr, A. Rosenthal, D. Zaak, R. Simon, R. Knuechel, C. Pilarsky and A. Hartmann. 2005. Gene expression profiling of progressive papillary noninvasive carcinomas of the urinary bladder. Clin. Cancer Research. 11: 4415-4429.

Yagi T., A. Morimoto, M. Eguchi, S. Hibi, M. Sako, R. Ishii, S. Mizutani, S. Imashuku, M. Ohki, and H. Ichikawa. 2003. Identification of a gene expression signature associated with pediatric AML prognosis. Blood. 102: 1849-1856.

Yeoh Eng-Juh, M.E. Ross, S.A. Shurtleff, W.K. Williams, D. Patel, R. Mahfouz, D.G. Behm, S.C. Raimondi, M.V. Relling, A. Patel, C. Cheng, D. Campana, D. Wilkins, X. Zhou, J. Li, H. Liu, C.-H. Pui, W.E. Evans, C. Naeve, L. Wong, and J. R. Downing. 2002. Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell. 1: 133-144.

Zaza G., M. Cheok, W. Yang, J.C. Panetta, C.-H. Pui, M.V. Relling, and W.E. Evans. 2005. Gene expression and thioguanine nucleotide disposition in acute lymphoblastic leukemia after in vivo mercaptopurine treatment. Blood: 2005-01-0143.

Zaza G., W. Yang, L. Kager, M. Cheok, J.Downing, C.-H. Pui, C.Cheng, M.V. Relling, and W.E. Evans. 2004. Acute lymphoblastic leukemia with TEL-AML1 fusion has lower expression of genes involved in purine metabolism and lower de novo purine synthesis. Blood. 104: 1435-1441.

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