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Scientific Articles using BioNumerics or GelCompar II:
Aabenhus R., S.L.W. On, B.L. Siemer, H. Permin, and L.P. Andersen. 2005. Delineation of Campylobacter concisus genomospecies by amplified fragment length polymorphism analysis and correlation of results with clinical data. J. Clin. Microbiol. 43: 5091-5096. Achtman M., K. Zurth, G. Morelli, G. Torrea, A. Guiyoule, and E. Carniel. 1999. Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudoturberculosis. Proc. Natl. Acad. Sci. USA 96: 14043-14048. Achtman, M. 2004. Population structure of pathogenic bacteria revisited. Int. J. Med. Microbiol. 294: 67-73. Adam H.J., Schurek K.N., Nichol K.A., Hoban C.J., Baudry T.J., Laing N.M., Hoban D.J., Zhanel G.G. 2007. Molecular Characterization of Increasing Fluoroquinolone Resistance in Streptococcus pneumoniae Isolates in Canada, 1997 to 2005. Antimicrob. Agents Chemother. 51(1):198-207. Adeleke A.A., B.S. Fields, R.F. Benson, M.I. Daneshvar, J.M. Pruckler, R.M. Ratcliff, T.G. Harrison, R.S. Weynant, R.J. Birtles, D. Raoult, and M. Halablab. Legionella drozanskii sp. nov., Legionella rowbothamii sp. nov. and Legionella fallonii sp. nov.: three unusual new Legionella species. Int. J. Syst. Evol. Microbiol. 51: 1151-1160. Advani A., D. Donnelly, and H. Hallander. 2004. Reference system for characterization of Bortedella pertussis pulsed-field gel electrophoresis profiles. J. Clin. Microbiol. 42: 2890-2897. Afshar B., Fry N. K., Bellamy W., Underwood A. P., Harrison T. G., and Members of th... 2007. External Quality Assessment of a DNA Sequence-Based Scheme for Epidemiological Typing of Legionella pneumophila by an International Network of Laboratories. J. Clin. Microbiol. 45(10): 3251-3256. Afshar B., Fry N. K., Bellamy W., Underwood A. P., Harrison T. G., et al. 2007. External Quality Assessment of a DNA Sequence-Based Scheme for Epidemiological Typing of Legionella pneumophila by an International Network of LaboratoriesJ. Clin. Microbiol. 45(10): 3251-3256. Aguado V., A.I. Vitas, and I. Garcia-Jalon. 2001. Random amplified polymorphic DNA typing applied to the study of cross-contamination by Listeria monocytogenes in processed food products. J. Food Prot. 64: 716-720. Aguilar O.M., M.V. Lopez, P.M. Riccillo, R.A. Gonzalez, M. Pagano, D.H. Grasso, A. Pühler, and G. Favelukes. 1998. Prevalence of the Rhizobium etli-like allele in genes coding for 16S rRNA among the indigenous rhizobial populations found associated with wild beans from the southern Andes in Argentina. Appl. Environ. Microbiol. 64: 3520-3524. Ahmed A., D. Adelmann, A. Fahal, H. Verbrugh, A. Van Belkum, and S. de Hoog. 2002. Environmental occurrence of Madurella mycetomatis, the major agent of human eumycetoma in Sudan. J. Clin. Microb. 40:1031-1036. Ahmed A.O.A., N. Desplaces, P. Leonard, F. Goldstein, S. De Hoog, H. Verbrugh, and A. van Belkum. 2004. Molecular detection and identification of agents of Eumycetoma: detailed report of two cases. J. Clin. Microbiol. 41: 5813-5816. Ahmed S., Macfarlane G. T., Fite A., McBain A. J., Gilbert P., Macfarlane S. 2007. Mucosal-Associated Bacterial Diversity associated with Human Terminal Ileum and Colonic Biopsy Samples. Appl. Envir. Microbiol. AEM.01143-07. Aires de Sousa M., T. Conceição, C. Simas, and H. de Lencastre. 2005. Comparison of genetic backgrounds of methicillin-resistant and susceptible Staphylococcus aureus isolates from Portuguese hospitals and the community. J. Clin. Microbiol. 43: 5150-5157. Aires-de-Sousa M., Parente C.E.S.R., Vieira-da-Motta O., Bonna I.C.F., Silva D.A., de Lencastre H. 2007. Characterization of Staphylococcus aureus Isolates from Buffalo, Bovine, Ovine, and Caprine Milk Samples Collected in Rio de Janeiro State, Brazil. Appl. Envir. Microbiol. 73(12):3845-3849. Alam S., S.R. Brailsford, R.A. Whiley, and D. Beighton. 1999. PCR-based methods for genotyping viridans group streptococci. J. Clin. Microbiol. 37: 2772-2776. Alam.S., R. Brailsford, S. Adams, C. Allison, E. Sheehy, L. Zoitopoulos, E.A. Kidd, and E. Beighton. 2000. Genotypic heterogeneity of Streptococcus oralis and distinct aciduric suppopulations and distinct aciduric subpopulations in human dental plaque. Appl. Env. Microbiol. 66: 3330-3336. Alekseev A.N., H.V. Dubinina, I. Van De Pol, and L.M. Schouls. 2001. Identification of Ehrlichia spp. and Borrelia burgdorferi in Ixodes ticks in the Baltic regions of Russia. J. Clin. Microbiol. 39: 2237-2242. Al-Hajoj S. A. M., Zozio T., Al-Rabiah F., Mohammad V., Al-Nasser M., Sola C., Rastogi N. 2007. First Insight into the Population Structure of Mycobacterium tuberculosis in Saudi Arabia. J. Clin. Microbiol. 45(8): 2467-2473. Alippi A.M., A.C. Lopez, and O.M.Aguilar. 2002. Differentiation of Paenibacillus larvae subsp. Larvae, the cause of Americal foulbrood of Honeybees, by using PCR and restriction fragment analysis of genes encoding 16SrRNA. Appl. Environ. Microbiol. 68:3655-3660. Alippi, A.M. and O.M. Aguilar. 1998. Unique fingerprints of Paenibacillus larvae subsp. larvae strains. Journal of Apicultural Research 37: 273-280. Allgaier A., R. Goethe, H.J. Wisselinck, H.E. Smith, and P. Valentin-Weigand. 2001. Relatedness of Streptococcus suis isolates of various serotypes and clinical backgrounds as evaluated by macrorestriction analysis and expression of potential virulence traits. J. Clin. Microbiol. 39: 445-453. Allix-Beguec C., Supply P., Wanlin M., Bifani P., Fauville-Dufaux M. 2007. Standardised PCR-based Molecular Epidemiology of Tuberculosis in the Brussels-Capital Region. Eur. Respir. J. 09031936.00053307. Amorim M. L., Faria N. A., Oliveira D. C., Vasconcelos C., Cabeda J. C., Mendes A. C., Calado E., Castro A. P., Ramos M. H., Amorim J. M., de Lencastre H. 2007. Changes in the Clonal Nature and Antibiotic Resistance Profiles of Methicillin-Resistant Staphylococcus aureus Isolates Associated with Spread of the EMRSA-15 Clone in a Tertiary Care Portuguese Hospital. J. Clin. Microbiol. 45(9): 2881-2888. Andrade D.S., P.J. Murphy, and K.E. Giller. 2002. The diversity of Phaseolus-nodulating rhizobial populations is altered by liming of acid soils planted with Phaseolus vulgaris, L. in Brazil. Appl. Environ. Microbiol. 68:4025-4034. Andronov E.E., Z. Terefework, M.L. Roumiantseva, N.I. Dzyubenko, O.P. Onichtchouk, O.N. Kurchak, A. Dresler-Nurmi, J.P.W. Young, B.V. Simarov, and K. Lindström. 2003. Symbiotic and genetic diversity of Rhizobium galegae isolates collected from the Galega orientalis gene center in the Causasus. Appl. Environ. Microbiol. 69: 1067-1074. Apajalahti J.H.A, H. Kettunen, A. Kettunen, W.E. Holben, P.H. Nurminen, N. Rautonen, and M. Mutanen. 2002. Culture-independent microbial community analysis reveals that inulin in the diet primarily affects previously unknown bacteria in the mouse cecum. Appl. Environ. Microbiol. 68: 4986-4995. Angen O., P. Ahrens, P. Kuhnert, H. Christensen, and R. Mutters. 2003. Proposal of Histophilus somni gen.nov., sp. Nov. for the three species incertae sedis ‘Haemophilus somnus’, ‘Haemophilus agni’ and ‘Histophilus ovis’. Int. J. Syst. Evol. Microbiol. 53: 1449-1456. Anthony M., B. Rose, M. Beard Pegler, M. Elkins, H. Service, K. Thamotharampillai, J. Watson, M. Robinson, P. Bye, J. Merlino, and C. Harbour. 2002. Genetic analysis of Pseudomonas aeruginosa isolates from the sputa of Australian adult cystic fibrosis patients. J. Clin. Microbiol. 40:2772-2778. Aquino De Muro, M., S. Elliott, D. Moore, B.L. Parker, M. Skinner, W. Reid, and M. El Bouhssini. 2005. Molecular characterisation of Beauveria bassiana isolates obtained from overwintering sites of Sunn Pests (Eurygaster and Aelia species). Mycol. Res. 109 (3): 294–306. Arias C.R., L. Verdonck, J. Swings, E. Garay, and R. Aznar. 1997. Intraspecific differentiation of Vibrio vulnificus biotypes by amplified fragment length polymorphism and ribotyping. Appl. Environ. Microbiol. 63: 2600-2606. Arias C.R., L. Verdonck, J. Swings, R. Aznar, and E. Garay. 1997. A polyphasic approach to study the intraspecific diversity amongst Vibrio vulnificus isolates. Syst. Appl. Microbiol. 20: 622-633. Ast J. C., Cleenwerck I., Engelbeen K., Urbanczyk H., Thompson F. L., De Vos P., Dunlap P. V. 2007. Photobacterium kishitanii sp. nov., a luminous marine bacterium symbiotic with deep-sea fishes. Int J Syst Evol Microbiol. 57(9): 2073-2078. Auckland C., L. Teare, F. Cooke, M.E. Kaufmann, M. Warner, G. Jones, K. Bamford, H.Ayles, and A.P. Johnson. 2002. Linezolid-resistant enterococci: report of the first isolates in the United Kingdom. J. Antimicrob. Chemother. 50:743-746. Augustynowicz E., A. Gzyl, L. Szenborn, D. Banys, G. Gniadek, and J. Slusarczyk. 2004. Comparison of usefulness of randomly amplified polymorphic DNA and amplified-fragment length polymorphism techniques in epidemiological studies on nasopharyngeal carriage of non-typable Haemophilus influenzae. J. Med. Microbiol.52: 1005-1014. Autio T., S. Hielm, M. Miettinen, A.-M. Sjöberg, K. Aarnisalo, J. Björkroth, T. Mattila-Sandholm, and H. Korkeala. 1999. Sources of Listeria monocytogenes contamination in a cold-smoked rainbow trout processing plant detected by pulsed-field gel electrophoresis typing. Appl. Environ. Micriobiol. 65: 150-155. Avery S.M., E. Liebana, C.-A. Reid, M.J. Woodward, and S. Buncic. 2002. Combined use of two genetic fingerprinting methods, pulsed-field gel electrophoresis and ribotyping, for characterization of Escherichia coli 0157 isolates from food animals, retail meats, and cases of human disease. J. Clin. Microb. 40:2806-2812. Avrova A.O., L.J. Hyman, R.L. Toth, and I.K. Toth. 2002. Application of amplified fragment length polymorphism fingerprinting for taxonomy and identification of the soft rot bacteria Erwinia carotovora and Erwinia chrysanthemi. Appl. Environ. Microbiol. 68:1499-1508. Avrova A.O., Whisson S.C., Pritchard L., Venter E., De Luca S., Hein I., Birch P.R.J. 2007. A novel non-protein-coding infection-specific gene family is clustered throughout the genome of Phytophthora infestans. Microbiology.153(3):747-759. Ayala-del-Río H.L., S.J. Callister, C.S. Criddle, and J.M. Tiedje. 2004. Correspondence between community structure and function during succession in Phenol- and Phenol-plus-Trichloroethene-Fed sequencing bath reactors. Appl. Environ. Microbiol. 70: 4950-4960. Baddley J.W., P.G. Pappas, A.C. Smith, and S.A. Moser. 2003. Epidemiology of Aspergillus terreus at a university hospital. J. Clin. Microbiol. 41: 5525-5529. Baele M., Decostere A., Vandamme P., Van den Bulck K., Gruntar I., Mehle J., Mast J., Ducatelle R., Haesebrouck F. 2008. Helicobacter baculiformis sp. nov., isolated from feline stomach mucosa. Int J Syst Evol Microbiol. 58(2): 357-364. Baele M., L.A. Devriese, M. Vancanneyt, M. Vaneechoutte, C. Snauwaert, J. Swings, and F. Haesebrouck. 2003. Emended description of Streptococcus ferus isolated from pigs and rats. Int. J. Syst. Evol. Microbiol. 53: 143-146. Baele M., M. Vancanneyt, L.A. Devriese, K. Lefebvre, J. Swings, and F. Haesebrouck. 2003. Lactobacillus ingluviei sp. nov., isolated from the intestinal tract of pigeons. Int. J. Syst. Evol. Microbiol. 53: 133-136. Baeza L.C., M.T. Matsumoto, A.M.Fusco Almeida, and M.J. Soares Mendes-Giannini. 2006. Strain differentiation of Trichophyton rubrum by randomly amplified polymorphic DNA and analysis of rDNA nontranscribed spacer. J. Med. Microbiol. 55: 429-426. Bahnumathi R., F. Sabeena, S.R. Isac, B.N. Shukla, and D.V. Singh. 2003. Molecular characterization of Vibrio cholerae 0139 bengal isolated from water and the aquatic plant Eichhornia crassipes in the river Ganga, Varanasi, India. Appl. Environ. Microbiol. 69: 2389-2394. Bajanca P., M. Caniça, and the Multicenter study group. 2004. Emergence of Nonencapsulated and encapsulated Non-b-type invasive Haemophilus influenzae isolates in Portugal (1989-2001).J. Clin. Microbiol. 42: 807-810. Balandreau J., V. Viallard, B. Cournoyer, T. Coenye, S. Laevens, and P. Vandamme. 2001. Bukholderia cepacia genomovar III is a common plant-associated bacterium. Appl. Environ. Microbiol. 67: 982-985. Baldani J.I., B. Pot, G. Kirchhof, E. Falsen, V.L.D. Baldani, F.L. Olivares, B. Hoste, K. Kersters, M. Hartman, and J. D'bereiner. 1996. Emended description of Herbaspirillum, inclusion of [Pseudomonas] rubrisubalbicans, a mild plant pathogen as Herbaspirillum rubrisubalbicans comb.nov.; and classification of a group of clinical isolates (EF Group 1) as Herbaspirillum species 3. Int. J. Syst. Bacteriol. 46: 802-810. Ball L.M., M.A. Bes, B. Theelen, T. Boekhout, R.M. Egeler, and E.J. Kuijper. 2004. Significance of amplified fragment length polymorphism in identification and epidemiological examination of Candida species colonization in children undergoing allogeneic stem cell transplantation. J. Clin. Microbiol. 42: 1673-1679. Bandera A., A. Gori, L. Catyozzi, A.D. Esposti, G. Marchetti, C. Molteni, G. Ferrario, L. Codecasa, V. Penati, A. Matteelli, and F. Franzetti. 2001. Molecular epidemiology study of exogenous reinfection in an area with a low incidence of tuberculosis. J. Clin. Micriobiol. 39: 2213-2218. Barcellos F.G., Menna P., da Silva Batista J.S., Hungria M. 2007. Evidence of Horizontal Transfer of Symbiotic Genes from a Bradyrhizobium japonicum Inoculant Strain to Indigenous Diazotrophs Sinorhizobium (Ensifer) fredii and Bradyrhizobium elkanii in a Brazilian Savannah Soil. Appl. Envir. Microbiol. 73(8):2635-2643 Barlow R.E.L., D.M. Gascoyne-Binzi, S.H. Gillespie, A. Dickens, S. Qamer, and P.M. Hawkey. 2001. Comparison of variable number tandem repeat and IS6110-restriction fragment length polymorphism analyses for discrimination of high- and low-copy-number IS6110 Mycobacterium tuberculosis isolates. J. Clin. Microbiol. 39: 2453-2457. Bart A., I.G.A. Schuurman, M. Achtman, D.A. Caugant, J. Dankert, and Arie van der Ende. 1998. Randomly amplified polymorphic DNA genotyping of serogroup A meningococci yields results similar to those obtained by multilocus enzyme electrophoresis and reveals new genotypes. J. Clin. Microbiol. 36: 1746-1749. Bart A., J. Dankert, and A. van der Ende. 1999. Antigenic variation of the class I outer membrane protein in hyperendemic Neisseria meningitidis strains in the Netherlands. Infect. Immun. 67: 3842-3846. Bartie K.L., D.W. Williams, M.J. Wilson, A. J. C. Potts, and M.A.O. Lewis. 2001. PCR fingerprinting of Candida albicans associated with chronic hyperplastic candidosis and other oral conditions. J. Clin. Microbiol. 39: 4066-4075. Bartie K.L., M.J. Wilson, D.W. Williams, and M.A.O. Lewis. 2000. Macrorestriction fingerprinting of "Streptococcus milleri " group bacteria by pulsed-field gel electrophoresis J. Clin. Microbiol 38: 2141-2149. Bartkus J.M., B.A. Juni, K. Ehresman, C.A. Miller, G.N. Sanden, P.K. Cassiday, M. Saubolle, B. Lee, J. Long, A.R. Harrison Jr., and J.M. Besser. 2003. Identification of a mutation associated with erythromycin resistance in Bortedella pertussis: implications for surveillance of antimicrobial resistance. J. Clin. Microbiol. 41: 1167-1172. Barton C., Ng L.-K., Tyler S.D., Clark C.G. 2007. Temperate Bacteriophages Affect Pulsed-Field Gel Electrophoresis Patterns of Campylobacter jejuni. J. Clin. Microbiol. 45(2):386-391. Bastiaens L., D. Springael, P. Wattiau, H. Harms, R. deWachter, H. Verachtert, and L. Diels. 2000. Isolation of adherent polycyclic aromatic hydrocarbon (PAH)-degrading bacteria using PAH-sorbing carriers. Appl. Environm. Microbiol. 66: 1834-1843. Batchelor M. K.L. Hopkins, E.J. Threlfall, F.A. Clifton-Hadley, A.D. Stallwood, R.H. Davies, and E. Liebana. 2005. Characterization of AmpC-Mediated resistance in clinical Salmonella isolates recovered from humans during the period 1992-2003 in England and Wales. J. Clin. Microbiol. 43: 2261-2265. Batchelor M., K. Hopkins, E.J. Threlfall, F.A. Clifton-Hadley,A.D. Stallwood, R.H. Davies, and E. Liebana. 2005. blaCTX-M Genes in clinical Salmonella isolates recovered from humans in England and Wales from 1992-2003. Antimicrob. Agents & Chemotherapy. 49: 1319-1322. Batt S.L., B.M. Charalambous, T.D. McHugh, S. Martin, and S.H. Gillespie. 2005. Novel PCR-restriction fragment length polymorphism method for determining serotypes or serogroups of Streptococcus pneumoniae isolates. J. Clin. Microbiol. 43: 2656-2661. Bauer J., Å.B. Andersen, K. Kremer, and H. Miörner. 1999. Usefulness of spoligotyping to discriminate IS6110 low-copy-number Mycobacterium tuberculosis complex strains cultured in Denmark. J. Clin. Microbiol. 37: 2602-2606. Baums C.G., Verkuhlen G.J., Rehm T., Silva L.M.G., Beyerbach M., Pohlmeyer K., Valentin-Weigand P. 2007. Prevalence of Streptococcus suis Genotypes in Wild Boars of Northwestern Germany. Appl. Envir. Microbiol. 73(3):711-717. Beasley S.S., and P.E.J. Saris. 2004. Nisin-producing Lactococcus lactis strains isolated from human milk. Appl. Environ. Microbiol. 70: 5051-5053. Behrendt U., A. Ulrich, and P. Schumann. 2003. Fluorescent pseudomonas associated with the phyllosphere of grasses; Pseudomonas trivialis sp.nov., Pseudomonas poae sp.nov. and Pseudomonas congelans sp.nov. Int. J. Syst. Evol. Microbiol. 53: 1461-1469. Behrendt U., Ulrich A., Schumann P., Meyer J.-M., Sproer C. 2007. Pseudomonas lurida sp. nov., a fluorescent species associated with the phyllosphere of grasses. Int J Syst Evol Microbiol. 57(5):979-985. Benediktsdottir E., L. Verdonck, C. Spröer, S. Helgason, and J. Swings. 2000. Characterization of Vibrio viscosus and Vibrio wodanis isolated at different geographical locations: a proposal for reclassification of Vibrio viscosis as Moritella viscosa comb. nov. Int. J. Syst. Evol. Microbiol. 50: 479-488. Ben-Haim Y., F.L. Thompson, C.C. Thompson, M.C. Cnockaert, B. Hoste, J. Swings, and E. Rosenberg. 2003. Vibrio corallilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis. Int. J. Syst. Evol. Microbiol. 53: 309-315. Bent S.J., C.L. Gucker, Y. Oda, and L.J. Forney. 2003. Spatial distribution of Rhodopseudomonas palustris ecotypes on a local scale. Appl. Environ. Microbiol. 69: 5192-5197. Berg G., N. Roskot, A. Steidle, L. Eberl, A. Zock, and K. Smalla. 2002. Plant-dependent genotypic and phenotypic diversity of antagonistic rhizobacteria isolated from different Verticillium host plants. Appl. Environ. Microbiol. 68:3328-3338. Berg G., N. Roskot, and K. Smalla. 1999. Genotypic and phenotypic relationships between clinical and environmental isolates of Stenotrophomonas maltophilia. J. Clin. Microbiol. 37: 3594-3600. Berger B., Pridmore R.D., Barretto C., Delmas-Julien F., Schreiber K., Arigoni F., Brussow H.. 2007. Similarity and Differences in the Lactobacillus acidophilus Group Identified by Polyphasic Analysis and Comparative Genomics. J. Bacteriol. 189(4):1311-1321. Bernardet J.-F., P. Segers, M. Vancanneyt, F. Berthe, K. Kersters, and P. Vandamme. 1996. Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int. J. Syst. Bacteriol. 46: 128-148. Bernbom N., T.R. Licht, C.-H. Brogren, B. Jelle, A.H. Johansen, I. Badiola, F.K. Vogensen, and B. Nǿrrung. 2006. Effects of Lactococcus lactis on composition of intestinal microbiota: role of Nisin. Appl. Environ. Microbiol. 72: 239-244. Bernbom N., T.R. Licht, C.-H. Brogren, B. Jelle, A.H. Johansen, I. Badiola, F.K. Vogensen, and B. Nǿrrung. 2006. Effects of Lactococcus lactis on composition of intestinal microbiota: role of Nisin. Appl. Environ. Microbiol. 72: 239-244. Berrens Z. J., Marrs C. F., Pettigrew M. M., Sandstedt S. A., Patel M., Gilsdorf J. R. 2007. Genetic diversity of paired middle ear and pharyngeal non-typeable Haemophilus influenzae isolates from children with acute otitis media. J. Clin. Microbiol. JCM.00964-07. Berry A., D. Janssens, M. Hümbelin, J.P.M. Jore, B. Hoste, I. Cleenwerck, M. Vancanneyt, W. Bretzel, A.F. Mayer, R. Lopez-Ulibarri, B. Shanmugam, J. Swings, and L. Pasamontes. 2003. Paracoccus zeaxanthinifaciens sp. nov., a zeaxanthin-producing bacterium. Int. J. Syst. Evol. Microbiol. 53: 231-238. Berthier, F., E. Beuvier, A. Dasen, and R. Grappin 2001. Origin and diversity of mesophilic lactobacilli in Comté cheese, as revealed with repetitive and species-specific primers. Int. Dairy J. 11: 293-305. Bertrand S., G. Huys, M. Yde, K. D’Haene, F. Tardy, M. Vrints, J. Swings, and J.-M. Collard. 2005. Detection and characterization of tet(M) in tetracycline-resistant Listeria strains from human and food-processing origins in Belgium and France. J. Med. Microbiol. 54: 1151-1156. Besse P., G. Taylor, B. Carroll, N. Berding, D. Burner, and C.L. McIntyre. 1998. Assessing genetic diversity in a sugarcane germplasm collection using an automated AFLP analysis. Genetica, 104: 143-153. Beutin L., S. Kaulfuss, S. Herold, E. Oswald, and H. Schmidt. 2005. Genetic analysis of enteropathogenic and enterohemorrhagic Escherichia coli serogroup O103 strains by molecular typing of virulence and housekeeping genes and pulsed-field gel electrophoresis. J. Clin. Microbiol.43: 1552-1563. Bielaszewska M., H. Schmidt, M.A. Karmali, R. Khakhria, J. Janda, K. Blahova, and Helge Karch. 1998. Isolation and characterization of sorbitol-fermenting shiga toxin (verocytotoxin)-producing Escherichia coli O157: Hstrains in the Czech Republic. J Clin. Microbiol. 36: 2135-2137. Bielaszewska M., Prager R., Kock R., Mellmann A., Zhang W., Tschape H., Tarr P.I., Karch H. 2007. Shiga Toxin Gene Loss and Transfer In Vitro and In Vivo during Enterohemorrhagic Escherichia coli O26 Infection in Humans. Appl. Envir. Microbiol. 73(10):3144-3150 Bielaszewska M., R. Prager, W. Zhang, A.W. Friedrich, A. Mellmann, H. Tschäpe, and H. Karch. 2006. Chromosomal dynamism in progeny of outbreak-related sorbitol-fermenting enterohemorrhagic Escherichia coli O157:NM. Appl. Environ. Microbiol. 72: 1900-1909. Bik E.M., R.D. Gouw, and F.R. Mooi. 1996. DNA fingerprinting of Vibrio cholerae strains with a novel insertion sequence element: a tool to identify epidemic strains. J. Clin. Microbiol. 34: 1453-1461. Birtles A. N. McCarthy, C.L. Sheppard, H. Rutter, M. Guiver, E. 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