Open source projects 

All open source products from Applied Maths are subject to the terms and conditions of the  GNU General Public License.

Velvet for Windows

A modification of the Velvet 1.1.04 assembler for Windows operating systems (D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research 18:821-829). The downloads contain versions for Windows 32-bit single-threaded, Windows 32-bit multi-threaded, Windows 64-bit single-threaded and Windows 64-bit multi-threaded, respectively.

 Velvet 1.1.04 for Windows Executables (ZIP) - 15 July 2011 (625 KB)
 Velvet 1.1.04 for Windows Source Code (ZIP) - 15 July 2011 (196 KB)
 Building VELVET 1.1.04 for Windows (PDF) - 15 July 2011 (594 KB)

Ray for Windows

A modification of the Ray 1.6.0 assembler for Windows operating systems (S. Boisvert, F. Laviolette and J. Corbeil. 2010. Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies. J. Comput. Biol. 17:1519-1533). The downloads contain versions for Windows 32-bit and Windows 64-bit operating systems.

Ray 1.6.0 for Windows Executables (ZIP) - 15 July 2011 (377 KB)